Publications

Hanna ZR, Dumbacher JP, Bowie RCK, Henderson JB, Wall JD. 2018. Whole-genome analysis of introgression between the spotted owl and barred owl (Strix occidentalis and Strix varia, respectively; Aves: Strigidae) in western North America. G3: Genes, Genomes, Genetics 8, no. 12: 3945–52. DOI:10.1534/g3.118.200754. Available here or Download PDF
Hanna ZR, Cicero C, Bowie RCK. 2018. Molecular evidence that the Channel Islands populations of the orange-crowned warbler (Oreothlypis celata; Aves: Passeriformes: Parulidae) represent a distinct evolutionary lineage. PeerJ Preprints 6: e27418v1. DOI:10.7287/peerj.preprints.27418v1. Available here or Download PDF
Hanna ZR, Dumbacher JP, Bowie RCK, Wall JD. 2018. Whole-genome sequences suggest long term declines of spotted owl (Strix occidentalis) (Aves: Strigiformes: Strigidae) populations in California. bioRxiv 343434. DOI:10.1101/343434. Available here or Download PDF
Hanna ZR, Henderson JB, Sellas AB, Fuchs J, Bowie RCK, Dumbacher JP. 2017. Complete mitochondrial genome sequences of the northern spotted owl (Strix occidentalis caurina) and the barred owl (Strix varia; Aves: Strigiformes: Strigidae) confirm the presence of a duplicated control region. PeerJ 5:e3901. DOI: 10.7717/peerj.3901. Available here or Download PDF
Hanna ZR, Henderson JB, Wall JD, Emerling CA, Fuchs J, Runckel C, Mindell DP, Bowie RCK, DeRisi JL, Dumbacher JP. 2017. Northern spotted owl (Strix occidentalis caurina) genome: divergence with the barred owl (Strix varia) and characterization of light-associated genes. Genome Biology and Evolution 9(10):2522-2545. DOI: 10.1093/gbe/evx158. Available here or Download PDF
Bowie RCK, Feldheim KA, Hanna ZR, Sellas AB, Cicero C. 2017. Development of Polymorphic Tetranucleotide Microsatellite Markers for New World Warblers (Aves: Passeriformes: Parulidae) with Broad Cross-species Utility. The Wilson Journal of Ornithology 129:401–407. DOI: 10.1676/16-110.1. Available here or Download PDF
Linck EB, Hanna ZR, Sellas A, Dumbacher JP. 2017. Evaluating hybridization capture with RAD probes as a tool for museum genomics with historical bird specimens. Ecology and Evolution 7:4755–4767. DOI: 10.1002/ece3.3065. Available here or Download PDF
Hanna ZR, Ortiz-Ramírez MF, Ríos-Muñoz CA, Cayetano-Rosas H, Bowie RCK, Navarro-Sigüenza AG. 2016. Phylogenetic and morphologic evidence confirm the presence of a new montane cloud forest associated bird species in Mexico, the Mountain Elaenia (Elaenia frantzii; Aves: Passeriformes: Tyrannidae). PeerJ 4:e1598. DOI: 10.7717/peerj.1598. Available here or Download PDF
Hanna ZR, Runckel C, Fuchs J, DeRisi JL, Mindell DP, Hemert CV, Handel CM, Dumbacher JP. 2015. Isolation of a Complete Circular Virus Genome Sequence from an Alaskan Black-Capped Chickadee (Poecile atricapillus) Gastrointestinal Tract Sample. Genome Announcements 3:e01081-15. DOI: 10.1128/genomeA.01081-15. Available here or Download PDF

Electronic Resources and Datasets

Hanna ZR, Henderson JB, Wall JD, Emerling CA, Fuchs J, Runckel C, Mindell DP, Bowie RCK, DeRisi JL, Dumbacher JP. 2017. Supplemental dataset for Northern Spotted Owl (Strix occidentalis caurina) genome assembly version 1.0. Zenodo. DOI: 10.5281/zenodo.822859.
Hanna ZR, Sellas AB. 2017. hyRADccg Version 1.0.0. Zenodo. DOI: 10.5281/zenodo.268048.
Henderson JB, Hanna ZR. 2016. scafSeqContigInfo. Version 1.0.0. Zenodo. DOI: 10.5281/zenodo.163748.
Henderson JB, Hanna ZR. 2016. BLATq. Version 1.0.2. Zenodo. DOI: 10.5281/zenodo.61136.
Henderson JB, Hanna ZR. 2016. excerptByIDs. Version 1.0.2. Zenodo. DOI: 10.5281/zenodo.61134.
Henderson JB, Hanna ZR. 2016. dupchk. Version 1.0.0. Zenodo. DOI: 10.5281/zenodo.163722.
Henderson JB, Hanna ZR. 2016. GItaxidIsVert. Version 1.0.0. Zenodo. DOI: 10.5281/zenodo.163737.
Henderson JB, Hanna ZR. 2016. scafN50. Version 1.0.0. Zenodo. DOI: 10.5281/zenodo.163739.